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Home
> Blast Search
BLAST
Parameters
Output format
:
Blastscope (2.2.8)
BLAST default format (2.2.24)
Program
:
blastn (DNA query vs. DNA database)
tblastx (DNA query [translated into protein]vs. DNA database [translated into protein])
tblastn (Protein query vs. DNA database [translated into protein])
Database
:
Flanking sequence - 32 seq
Please specify the sequence data to reference.
File Upload
:
or COPY & PASTE
Options for BLAST Search
Filter
ON
OFF
Query Genetic Codes
Standard (1)
Vertebrate Mitochondrial (2)
Yeast Mitochondrial (3)
Mold Mitochondrial; ... (4)
Invertebrate Mitochondrial (5)
Ciliate Nuclear; ... (6)
Echinoderm Mitochondrial (9)
Euplotid Nuclear (10)
Bacterial (11)
Alternative Yeast Nuclear (12)
Ascidian Mitochondrial (13)
Flatworm Mitochondrial (14)
Blepharisma Macronuclear (15)
Expect
Frame shift penalty
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
25
30
50
1000
No OOF
Matrix
PAM30
PAM70
BLOSUM80
BLOSUM62
BLOSUM45
Other options
Options for BLASTScope
Sort Hits order by
Hit Number
bit score
query from
definition
alignment length
Number of Hits
All Hits  
Limit
Hits
Number of HSPs
All HSPs  
Limit
HSPs
Limit results by alignment length
>
Limit results by range of query sequence
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Data setting error.